Forensic Science Infernational, 14 (1979) 41 - 47 0 Elsevier Sequoia S.A., Lausanne - Printed in the Netherlands

41

FREQUENCIES OF SALIVARY GENETIC MARKER SYSTEMS IN THE JAPANESE POPULATION AND THEIR APPLICATION TO FORENSIC MEDICINE

SHIGENORI

IKEMOTO and KOICHI TOMITA

Department of Legal Medicine, Jichi Medical School, Tochigi (Japan) KIYOSHI MINAGUCHI and KAZUO SUZUKI Department of Forensic Odonfology, (Received November 17,1978;

Tokyo Dental College, Tokyo (Japan)

accepted March 22,1979)

summary Seven salivary polymorphic systems were studied using whole and parotid saliva from random Japanese individuals. The gene frequencies obtained were: Pa+ = 0.212, Pb’ = 1.000, Pb2 = 0,Pr’ = 0.763, Pr2 = 0.237, Db+ = 0.051, Pm+ = 0.409, Ph+ = 0.026 and Amy: = 0.013, respectively. Based on these gene frequencies, the chances for exclusion of falsely alleged fathers were calculated. The chance of exclusion on the basis of five salivary polymorphic systems was 0.305. The combined chance of exclusion utilizing only blood, serum and red-cell enzyme polymorphic systems among the Japanese population was 0.919; however, by applying salivary polymorphic systems to the calculation, the total exclusion rose to 0.944.

Introduction The Se system [ 11, whose markers are A, B, H and Lea, Leb blood-group substances, the V system [2], whose markers are typical blood-group antibodies, and the Am system [3], the allo-types in the heavy chain of secretor IgA, are well-known genetic marker systems in human saliva. These systems have all added useful information to research in human genetics, paternity cases in forensic medicine, and diagnosis in clinical medicine. Since 1970, genetic studies of salivary proteins, especially salivary amylase and parotid proteins, have been developed and several polymorphisms - AmyI (salivary amylase) [4], Pb (parotid basic proteins) [S] , Pr (proline-rich proteins) [6], Db (double-band proteins) [7], Sal [8] and Pa (salivary acidic protein) [9] have been reported. The present authors have also reported new genetic markers in human saliva, the Pm (parotid middle-band protein) [lo] and Ph (parotid heavy protein) [ 111 systems. In our present study the phenotype frequencies and the gene frequencies of these systems in the Japanese population were examined and the application to forensic medicine was also studied.

42

Materials and methods

Saliva Amy, system: whole saliva samples were used. Pa, Pb, Pr, Db, Pm and Ph systems: parotid salivasamples were collected with a double-chamber cup of the Curby type and were concentrated by lyophilization. Detection

of salivary polymorphisms

Pa, Pb and Pm systems: acid-urea starch gel electrophoresis was used following the method of Azen [5] for Pb, of Friedman et al. [9] for Pa, and of Ikemoto et al. [lo] for Pm. Pr, Db and Amy, systems: alkaline-slab polyacrylamide gel electrophoresis was used according to the method of Azen and Denniston [7] for Pr and Db, and of Merrit et al. for Amy,. Ph system: SDS polyacrylamide gel electrophoresis was carried out according to the method of Ikemoto et al. [ll] . Calculation

of the chance

of exclusion

of falsely alleged fathers.

The chance of exclusion of falsely alleged fathers was calculated with reference to the formula of Ueno [ 121.

Results and discussion Phenotype comparison

frequencies and gene frequencies in the Japanese of gene frequencies with other racial groups

population

and

Phenotype and gene frequencies of Pa, Pb, Pr, Db, Pm, Ph and Amy, systems in samples of randomly chosen individuals from a Japanese population are shown in Table 1. Among 224 Japanese individuals, 37.9% were Pa(+) and 62.1% were Pa(-). Gene frequencies estimated were Pa+ 0.212 and Pa- 0.788. All 175 samples were of Pbl-ltype. Pr and Db systems were examined in 131 individuals. The proportions of Prl-1, Prl-2 and Pr2-2 types were 57.2%, 38.2% and 4.6%, respectively; of the Db system, 9.9% were Db(+) type and 90.1% were of Db(-) type. Gene frequencies calculated were, Pr’ 0.763, Pr2 0.237, Db+ 0.051 and Db- 0.959. The Pm system was examined in 223 individuals. Phenotype frequencies of Pm(+) and Pm(-) were 65.0% and 35.0%, respectively, and gene frequency estimates were Pm+ 0.409 and Pm- 0.591. A variant polymorphic protein was disclosed by SDS polyacrylamide gel electrophoresis from parotid saliva and we tentatively designated it Ph protein. Of 217 individuals examined 5.1% were of Ph(+) type. Gene frequencies obtained were Ph+ 0.026 and Ph- 0.974. The zymogram of salivary amylase was examined in 458 samples and 2.6% showed variant amylase zymograms. Gene frequency of all amylase variant alleles combined was 0.013.

43 TABLE

1

Phenotype and gene frequencies of Pa, Pb, Pr, Db, Pm, Ph and Amy1 systems in the Japanese population. The estimated gene frequencies of Pa, Pb, Pr, Db, Pm and Amy1 systems were not significantly different from those previously reported [ 13 - 18 ] Phenotype

Frequency

Gene frequency

Pa system

Pa(+) Pa(-) total

$5 (37.9%) 139 (62.1%) 224

Pa+ = 0.212 Pa- = 0.188

Pb system

Pbl-1 Pbl-2 Pb2-2 total

175 (100%) 0 (0%) 0 (0%) 175

Pb’ = 1.000 Pb2 =0

Pr system

Prl-1 Prl-2 Pr2-2 total

75 (57.2%) 50 (38.2%) 6 (4.6%) 131

Pr’ = 0 763 Pr2 = 0:237

Db system

Db(+) Db(-) total

13 (9.9%) 118 (90.1%) 131

Db+ = 0.051 Db- = 0.959

Pm system

Pm(+) Pm(-) total

145 (65.0%) 78 (35.0%) 223

Pm+ = 0.409 Pm- = 0.591

Ph system

Ph(+) Ph(-) total

11 (5.1%) 206 (94.9%) 217

Ph+ = 0.026 Ph- = 0.974

AmyI system

Amy1 V* AmylA total

12 (2.6%) 446 (97.4%) 458

Amy”** = 0.013 Amy h = 0.987

*All Amy1 variant phenotypes combined. **All Amy1 variant alleles combined.

A comparison of gene frequencies with those of other racial groups is made in Table 2. The data for the gene frequencies of Caucasians, Blacks and Chinese were obtained from the reports by Merrit et al. [4], Azen [5], Azen and Oppenheim [6], Azen and Denniston [ 71 and Friedman et al. [9]. The gene frequency of Db+ in Japanese (Db+ = 0.051) was lower than in Caucasians (Db+ = 0.12), Negroes (Db+ = 0.56) and Chinese (Db+ = 0.07), while the frequency of Pb’ in Japanese people (Pb’ = 1.000) was higher than in Caucasians (Pb’ = 0.995) and Blacks (Pb’ = 0.84). Frequencies of Pr’ and Amy: in Japanese people (Pr’ = 0.765, Amy; = 0.013) were somewhat higher than in Caucasians (Pr’ = 0.73, Amy: = 0.005) but lower than in Blacks (Pa’ = 0.14). For the Pm and Ph systems, comparison with other racial groups has not been carried out.

44 TABLE 2 Comparison of the allelic frequencies of various salivary polymorphisms Japanese (present study)

Caucasian American

Black American

Oriental American

Pa+ Pa-

0.212 0.788 (224)

0.21 0.79 (331)

0.14 0.86 (122)

0.42 0.58 (6)

Pb’ Pb2

1 .ooo 0 (175)

0.995

0.005 (101)

0.84 0.16 (90)

Prl Pr2

0.763 0.237 (131)

0.73 0.27 (120)

0.80 0.20 (79)

0.84 0.16 (40)

Db+ Db-

0.051 0.959 (131)

0.12 0.88 (100)

0.56 0.44 (100)

0.07 0.93 (54)

Pm+ Pm-

0.409

0.29

0.591 (223)

0.71 (Chinese) (20)

Ph+ Ph-

0.026 0.974 (217)

Locus and allele

Reference

Pa system : 9

Pb system : 5

Pr system :

Db system :

Pm system: 10

Ph system :

Amy1 system : Amy:*

Am

ye

0.013 0.987 (458)

11

0.005 0.995 (961)

0.039

4

0.961 (208)

*All Amy1 variant alleles combined.

Separate chances and the combined chance of exclusion of falsely alleged fathers The chances of exclusion of falsely alleged fathers in the Japanese population were calculated on the basis of the gene frequencies given above [ 121. When the calculation is made on the assumption that the loci for the different salivary polymorphic systems segregate independently, the combined chance of exclusion by these systems is 0.305 (Table 3). The chance of exclusion using blood-group polymorphic systems in the Japanese population is 0.680, and when the chances of exclusion from various serum and red-cell

45 TABLE 3 The chance of exclusion of falsely alleged fathers by salivary polymorphic

Pa system Pr system Db system Pm system Ph system

systems

Exclusion by each system

Combined exclusion

0.082 0.148 0.043 0.050 0.023

0.082 0.218 0.252 0.289 0.305

TABLE 4 The chance of exclusion of falsely alleged fathers by blood, serum and red-cell enzyme polymorphic systems

ABO system MN system Rh system P system Duffy system Kidd system Diego system Kell-Cellano system Se-se system Hp system Gc system Gm system Inv system Acp system PGM system 6PGD system GPT system EsD system Pa system Pr system Db system Pm system Ph system

Exclusion by each system

Combined exclusion

0.192 0.123 0.237 0.078 0.082 0.179 0.078 0.045 0.033 0.152 0.146 0.176 0.074 0.134 0.134 0.082 0.183 0.177 0.082 0.148 0.043 0.050 0.023

0.192 0.291 0.459 0.501 0.542 0.624 0.653 0.669 0.680 0.729 0.769 0.810 0.824 0.848 0.868 0.879 0.901 0.919 0.926 0.937 0.940 0.943 0.944

The calculations are based on Japanese gene frequencies [ 121.

enzyme

polymorphic

systems

are included,

amounts to 0.919 (Table 4). In addition, polymorphic systems was also included,

the combined

chance

when the calculation the combined chance

of exclusion from salivary of exclusion

46

rose to 0.944. All the Japanese samples we examined are restricted to the Pbl-1 type and this system therefore seems to be unsuitable for application to paternity cases. The frequency of Amy, variant phenotypes in Japanese people is 0.013 and genetic polymorphisms are also observed for other salivary enzymes [19 - 211. If these chances of exclusion calculated from their gene frequencies are considered, the rate of the index becomes higher. It may be concluded that salivary polymorphic systems offer considerable information for paternity cases in forensic medicine.

Acknowledgement This study was supported by a scientific research fund from the Ministry of Education, Science and Culture, Japan. References 1 R. R. Race and R. &urger, Blood Groups in Man. Davis, Philadelphia, 1975, p. 311. 2 H. Miyakoshi, The serological constitutions of men from the standpoint of iso-agglutinins in saliva. Jap. J. Leg. Med., 12 (Suppl.) (1951) 75 - 100 (in Japanese). 3 H. G. Kunkel, W. K. Smith, F. G. Jo&n, J. B. Natvig and S. D. Litwin, Genetic marker of the rA2 subgroup of rA immunoglobulins. Nature, 223 (1969) 1247 - 1248. 4 A. D. Merrit, M. L. Rivas, D. Bixler and R. Newell, Salivary and pancreatic amylase: Electrophoretic characterizations and genetic studies. Amer. J. Hum. Genet., 25 (1973) 510 - 522. 5 E. A. Azen, Genetic polymorphism of basic proteins from parotid saliva. Science, 176 (1972) 673 - 674. 6 E. A. Azen and F. G. Oppenheim, Genetic polymorphism of proline-rich salivary proteins. Science, 180 (1973) 1067 - 1069. 7 E. A. Azen and C. L. Denniston, Genetic polymorphism of human salivary prolinerich proteins: Further genetic analysis. Biochem. Genet., 12 (1974) 109 - 120. 8 C. R. Balakrishnan and G. C. Ashton, Polymorphism of human salivary proteins. Amer. J. Hum. Genet., 26 (1974) 145 - 153. 9 R. D. Friedman, A. D. Merrit and M. L. Rims, Genetic studies of human acidic salivary protein (Pa). Amer. J. Hum. Genet., 27 (1974) 292 - 303. 10 S. Ikemoto, K. Minaguchi, K. Suzuki and K. Tomita, New genetic marker in human parotid saliva (Pm). Science, 197 (1977) 378 - 379. 11 S. Ikemoto, K. Minaguchi, K. Tomita and K. Suzuki, A variant protein in human parotid saliva detected by SDS polyacrylamide gel electrophoresis and its inheritance. Ann. Hum. Genet., 43 (1979) in press. 12 S. Ueno, New Forensic Medicine. Nanzando, Tokyo, 1974, p. 346 (in Japanese). 13 S. Ikemoto, K. Minaguchi and H. Hinohara, Genetic polymorphism of human parotid salivary proteins (Pa, Pb, Pr, Db and Pm) and salivary amylase isozyme in Japanese population. Hum. Hered., 27 (1977) 328 - 331. 14 K. Minaguchi, S. Ikemoto, I. Nakajima and K. Suzuki, Studies of genetic markers in human saliva (I) Frequencies of Pa and Pb systems from parotid saliva of Japanese in Tokyo. Bull. Tokyo Dent. Coll., 17 (1976) 185 - 190. 15 K. Minaguchi, S. Ikemoto, K. Iida and K. Suzuki, Studies of genetic markers in human saliva (II) Frequencies of Pr and Db systems from parotid saliva of Japanese in Tokyo. Bull. Tokyo Dent. Coll., 17 (1976) 191 - 198.

47 16 H. Hinohara, K. Minaguchi, S. Ikemoto, M. Shimada and K. Suzuki, Studies of genetic markers in human saliva (III) Variants of human salivary amylase from Japanese in Tokyo and its inheritance. Bull. Tokyo Dent. Coll., 17 (1976) 199 - 204. 17 K. Minaguchi, S. Ikemoto, H. Hinohara, H. Oka and K. Suzuki, Studies of genetic markers in human saliva (IV) Frequencies of a new polymorphic protein (Pm) system from parotid saliva of Japanese in Tokyo. Bull. Tokyo Dent. Coll., 18 (1977) 13 - 17. 18 K. Minaguchi, S. Ikemoto, T. Tsutsumi and K. Suzuki, Studies of genetic markers in human saliva (V) Genetic study of a parotid middle-band protein (Pm): Further genetic analysis. Bull. Tokyo Dent. Coll., 19 (1978) 87 - 92. 19 S. G. Tan and G. C. Ashton, Saliva acid phosphatase: Genetic studies. Hum. Hered., 26 (1976) 81 - 89. 20 S. G. Tan and G. C. Ashton, Autosomal-B-phosphate dehydrogenase (hexose-6phosphate dehydrogenase) polymorphism in human saliva. Hum. Hered., 26 (1976) 113 - 123. 21 S. G. Tan, Human saliva esterase: Genetic studies. Hum. Hered., 26 (1976) 207 - 216.

Frequencies of salivary genetic marker systems in the Japanese population and their application to forensic medicine.

Forensic Science Infernational, 14 (1979) 41 - 47 0 Elsevier Sequoia S.A., Lausanne - Printed in the Netherlands 41 FREQUENCIES OF SALIVARY GENETIC...
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